Index

A

active (wsic.metadata.ngff.Channel attribute) AVIF (wsic.enums.Codec attribute)

axes (wsic.metadata.ngff.Multiscale attribute) Axis (class in wsic.metadata.ngff)

B

block_downsample_shape() (in module wsic.utils) block_reduce() (in module wsic.utils) BLOSC (wsic.enums.Codec attribute) BLOSC2 (wsic.enums.Codec attribute)

BROTLI (wsic.enums.Codec attribute) BT1700 (wsic.enums.ColorSpace attribute) BT601 (wsic.enums.ColorSpace attribute) BZ2 (wsic.enums.Codec attribute)

C

Channel (class in wsic.metadata.ngff) channels (wsic.metadata.ngff.Omero attribute) CIELAB (wsic.enums.ColorSpace attribute) CIELUV (wsic.enums.ColorSpace attribute) CMYK (wsic.enums.ColorSpace attribute) CMYKA (wsic.enums.ColorSpace attribute) Codec (class in wsic.enums) coefficient (wsic.metadata.ngff.Channel attribute) color (wsic.metadata.ngff.Channel attribute) ColorSpace (class in wsic.enums) condensed() (wsic.enums.Codec method) (wsic.enums.ColorSpace method)

conjunction() (wsic.magic.Incantation static method) CoordinateTransformation (class in wsic.metadata.ngff) coordinateTransformations (wsic.metadata.ngff.Dataset attribute) copy_from_reader() (wsic.writers.DICOMWSIWriter method) (wsic.writers.JP2Writer method) (wsic.writers.SVSWriter method) (wsic.writers.TIFFWriter method) (wsic.writers.Writer method) (wsic.writers.ZarrIntermediate method) (wsic.writers.ZarrWriter method) Creator (class in wsic.metadata.ngff) cv2_resize() (in module wsic.utils)

D

Dataset (class in wsic.metadata.ngff) datasets (wsic.metadata.ngff.Multiscale attribute) defaultT (wsic.metadata.ngff.RDefs attribute) defaultZ (wsic.metadata.ngff.RDefs attribute) DEFLATE (wsic.enums.Codec attribute)

DELTA (wsic.enums.Codec attribute) DICOMWSIReader (class in wsic.readers) DICOMWSIWriter (class in wsic.writers) disjunction() (wsic.magic.Incantation static method) downsample_shape() (in module wsic.utils) downsample_tile() (in module wsic.writers)

E

end (wsic.metadata.ngff.Window attribute)

F

family (wsic.metadata.ngff.Channel attribute) from_dicom() (wsic.enums.ColorSpace class method) from_dicom_transfer_syntax() (wsic.enums.Codec class method) from_file() (wsic.readers.Reader class method)

from_string() (wsic.enums.Codec class method) (wsic.enums.ColorSpace class method) from_tiff() (wsic.enums.Codec class method) (wsic.enums.ColorSpace class method)

G

get_codec() (wsic.writers.ZarrWriter static method) get_level_tile() (in module wsic.writers) get_tile() (wsic.readers.DICOMWSIReader method) (wsic.readers.OpenSlideReader method) (wsic.readers.Reader method) (wsic.readers.TIFFReader method) get_transcode_codec() (wsic.writers.ZarrWriter static method)

get_writer_class() (in module wsic.cli) GIF (wsic.enums.Codec attribute) GRAY (wsic.enums.ColorSpace attribute) GRAYSCALE (wsic.enums.ColorSpace attribute) GREY (wsic.enums.ColorSpace attribute) GREYSCALE (wsic.enums.ColorSpace attribute) GZIP (wsic.enums.Codec attribute)

H

handle_parse_result() (wsic.cli.MutuallyExclusiveOption method) header_bytes() (in module wsic.magic)

HSL (wsic.enums.ColorSpace attribute) HSV (wsic.enums.ColorSpace attribute)

I

id (wsic.metadata.ngff.Omero attribute)

Incantation (class in wsic.magic) inverted (wsic.metadata.ngff.Channel attribute)

J

J2K (wsic.enums.Codec attribute) JP2Reader (class in wsic.readers) JP2Writer (class in wsic.writers) JPEG (wsic.enums.Codec attribute)

JPEG2000 (wsic.enums.Codec attribute) JPEGLS (wsic.enums.Codec attribute) JPEGXL (wsic.enums.Codec attribute) JPEGXR (wsic.enums.Codec attribute)

L

label (wsic.metadata.ngff.Channel attribute) LERC (wsic.enums.Codec attribute) level_progress() (wsic.writers.Writer static method) LINEAR (wsic.enums.ColorSpace attribute) LJPEG (wsic.enums.Codec attribute) LLAB (wsic.enums.ColorSpace attribute)

LMS (wsic.enums.ColorSpace attribute) LZ4 (wsic.enums.Codec attribute) LZ4F (wsic.enums.Codec attribute) LZ77 (wsic.enums.Codec attribute) LZMA (wsic.enums.Codec attribute) LZW (wsic.enums.Codec attribute)

M

magic (wsic.magic.Spell attribute) main_process() (in module wsic.utils) max (wsic.metadata.ngff.Window attribute) mean_pool() (in module wsic.utils) min (wsic.metadata.ngff.Window attribute) MINISBLACK (wsic.enums.ColorSpace attribute) MINISWHITE (wsic.enums.ColorSpace attribute) model (wsic.metadata.ngff.RDefs attribute) module wsic wsic.cli wsic.codecs wsic.enums wsic.magic wsic.metadata wsic.metadata.ngff wsic.readers wsic.utils wsic.writers

mosaic_shape (wsic.writers.ZarrWriter property) mosaic_shape() (in module wsic.utils) mpp2ppu() (in module wsic.utils) Multiscale (class in wsic.metadata.ngff) multiscales (wsic.metadata.ngff.Zattrs attribute) MutuallyExclusiveOption (class in wsic.cli)

N

name (wsic.metadata.ngff.Axis attribute) (wsic.metadata.ngff.Creator attribute) (wsic.metadata.ngff.Omero attribute)

NONE (wsic.enums.Codec attribute)

O

offset (wsic.magic.Spell attribute) OKLAB (wsic.enums.ColorSpace attribute) Omero (class in wsic.metadata.ngff)

omero (wsic.metadata.ngff.Zattrs attribute) OpenSlideReader (class in wsic.readers) original_shape (wsic.readers.Reader property) (wsic.readers.TIFFReader property)

P

PACKBITS (wsic.enums.Codec attribute) PALETTE (wsic.enums.ColorSpace attribute) path (wsic.metadata.ngff.Dataset attribute) pbar() (wsic.readers.Reader static method) pentagram() (in module wsic.magic) perform() (wsic.magic.Incantation method) (wsic.magic.Spell method)

performance_check() (wsic.readers.DICOMWSIReader method) pillow_resize() (in module wsic.utils) PNG (wsic.enums.Codec attribute) ppu2mpp() (in module wsic.utils) pyramid_progress() (wsic.writers.Writer static method)

Q

QOI (wsic.enums.Codec attribute)

R

RDefs (class in wsic.metadata.ngff) rdefs (wsic.metadata.ngff.Omero attribute) Reader (class in wsic.readers) reader_tile_iterator() (wsic.writers.Writer method) REC601 (wsic.enums.ColorSpace attribute)

register_codecs() (in module wsic.codecs) resize_array() (in module wsic.utils) RGB (wsic.enums.ColorSpace attribute) RGBA (wsic.enums.ColorSpace attribute) RLAB (wsic.enums.ColorSpace attribute)

S

scale (wsic.metadata.ngff.CoordinateTransformation attribute) scale_to_fit() (in module wsic.utils) scipy_resize() (in module wsic.utils) SNAPPY (wsic.enums.Codec attribute) Spell (class in wsic.magic)

spells (wsic.magic.Incantation attribute) SRGB (wsic.enums.ColorSpace attribute) start (wsic.metadata.ngff.Window attribute) strictly_increasing() (in module wsic.utils) summon_file_types() (in module wsic.magic) SVSWriter (class in wsic.writers)

T

T (wsic.writers.Writer attribute) thumbnail() (wsic.readers.JP2Reader method) (wsic.readers.Reader method) (wsic.readers.TIFFReader method) TIFFReader (class in wsic.readers) TIFFWriter (class in wsic.writers) tile_slices() (in module wsic.utils) TimeoutWarning (class in wsic.utils) to_dicom_photometric_interpretation() (wsic.enums.ColorSpace method) to_dicom_transfer_syntax() (wsic.enums.Codec method)

to_jp2() (wsic.enums.ColorSpace method) to_numcodecs_config() (wsic.enums.Codec method) to_tiff() (wsic.enums.ColorSpace method) transcode_from_reader() (wsic.writers.DICOMWSIWriter method) (wsic.writers.TIFFWriter method) (wsic.writers.Writer method) (wsic.writers.ZarrWriter method) transcode_progress() (wsic.writers.Writer static method) type (wsic.metadata.ngff.Axis attribute) (wsic.metadata.ngff.CoordinateTransformation attribute)

U

unit (wsic.metadata.ngff.Axis attribute)

V

varnames() (in module wsic.utils) version (wsic.metadata.ngff.Creator attribute) (wsic.metadata.ngff.Multiscale attribute) (wsic.metadata.ngff.Omero attribute)

view_as_blocks() (in module wsic.utils)

W

warn_unused() (in module wsic.utils) WEBP (wsic.enums.Codec attribute) Window (class in wsic.metadata.ngff) window (wsic.metadata.ngff.Channel attribute) wrap_index() (in module wsic.utils) Writer (class in wsic.writers) wsic module wsic.cli module wsic.codecs module wsic.enums module

wsic.magic module wsic.metadata module wsic.metadata.ngff module wsic.readers module wsic.utils module wsic.writers module

X

XYB (wsic.enums.ColorSpace attribute)

Y

YCBCR (wsic.enums.ColorSpace attribute) YCC (wsic.enums.ColorSpace attribute)

YCOCG (wsic.enums.ColorSpace attribute) YCRCB (wsic.enums.ColorSpace attribute) YUV (wsic.enums.ColorSpace attribute)

Z

ZarrIntermediate (class in wsic.writers) ZarrReader (class in wsic.readers) ZarrWriter (class in wsic.writers) Zattrs (class in wsic.metadata.ngff)

ZFP (wsic.enums.Codec attribute) ZLIB (wsic.enums.Codec attribute) ZLIBNG (wsic.enums.Codec attribute) ZOPFLI (wsic.enums.Codec attribute) ZSTD (wsic.enums.Codec attribute)